api-python

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Using API via matlab_bridge

12

Hello, Despite several trials, my installation of matlab-bridge-api wasn't successful. Main points: - Python API seems to be running smoothly (`"./test_all.sh"` and for example `f = nwb_file.open(**settings)` run) - The...

martinholub

Query on using links within ImageSegmentation reference_images

2

Rather than creating fresh groups within the `reference_images` group, I'd like to link to existing groups in `/acquisition/timeseries`. However, my groups there are TwoPhotonSeries groups, and when I do ```python...

jonc125

I'm trying to represent data from an [AOL microscope](http://www.nature.com/nmeth/journal/v13/n12/full/nmeth.4033.html#methods) in NWB. It supports acquiring data directly from defined ROIs (which may be points, line segments, planes or volumes). I was...

jonc125

There are many examples in the `examples` folder and in the readme, but I think it'd be most useful for new users to have a minimal `quickstart` example that shows...

choldgraf

Right now the repository consists of a fair number of modules that seem to do one or two things each. I bet there are opportunities for these to be combined...

choldgraf

Have you guys thought about just calling this `nwb-python`? It would make the repository name more clearly linked to the project, since a repo called `api-python` is totally non-descriptive of...

choldgraf

It would be more clear how this package fits into the python science ecosystem if the docstrings followed the `numpydoc` format ([here is its explanation](https://github.com/numpy/numpy/blob/master/doc/HOWTO_DOCUMENT.rst.txt)). This basically entails writing parameters...

choldgraf

why are the core parts of `file`, `utils`, etc named as `nwb_XXX`? It seems unnecessary given that the main package is already called `nwb`, and in the examples when they're...

choldgraf

Currently the docs are difficult to follow since they're embedded into one gigantic readme file. Has there been any efforts to create a documentation folder that could be used to...

choldgraf

Calling py.nwb.display_versions.matlab() results in "Python Error: ImportError: cannot import name _errors"

1

I am trying to use matlab bridge to construct nwb file for our electrophysiology recording. I got stuck with below error. Any help would be greatly appreciated ! ``` matlab...

ragavsathish