Nick Cauldron

How did you get donut charts working? I've been struggling with this, and have been considering switching to a [different plug-in](https://github.com/SINTEF-9012/PruneCluster)

I agree it's worth thinking about the best way to present all those options. The ggplot style is really nice and I think intuitive when thinking about adding layers onto...

Reading other issues, the upload folder may be full again? https://github.com/MariaNattestad/Assemblytics/issues/7

Awesome, file uploads are working again :) The web server is great, and the CLI was pretty easy to pick up in the mean time. Thanks all!

This is an old issue so I don't know what the original version was, but today I upgraded from 2.0.6 to 2.0.11 and it did not decrease hotpep detection in...

Ah ok, that makes sense! I have CLR and not HiFi, though the coverage is very high (150-320x). 1-2 SMRT cells off a sequel I a couple of years ago...

Ah, that higher coverage setting will be great to make up for the noise in CLR. Nanopore has like 40x coverage I think, I should've mentioned that it's only pacbio...

Gotcha, and since it's all read-based phasing, phasing the nanopore samples with the pacbio wouldn't actually improve the phasing overall right? Phasing the whole population together is only important for...

Yep I'm working with a diploid Big thank you for this discussion, I appreciate the help! Think I've got a clear path moving forward now. On Fri, Sep 17, 2021,...

Thanks for the response Zhian. Both of those workarounds sounds like good options. Didn't realise the elements were saved in that way if I save it as an SVG. The...