Natalia Favila

Temporal components with negative values (in estimates.C)

4

For better support, please use the template below to submit your issue. When your issue gets resolved please remember to close it. Sometimes errors while running CNMF occur during parallel...

parameters in PCA-ICA analysis

6

Dear Biafra, we are using Ciatah to analyse our Ca imaging data, but we are struggling finding good parameter values for the PCA-ICA cell extraction. Can you tell me what...

Dear Biafra, we are running Ciatah (latest version) on matlab 2020 and 2021, and turboreging the videos (.h5). However, we manage to run it once correctly and then we ge...

HPC implementation for large videos

1

Dear Biafra, we are wondering if it would be possible to deploy ciatah for batch processing in a high performance computing cluster? Is this something that you have done before...

PCA traces have negative values

3

Hi Biafra, We are wondering what exactly are we getting in the traces from the PCA-ICA analysis? Looking at the traces stored in the PCA-ICA output.mat file we noticed some...

Dear Biafra, is there a way to merge two components into one? We are using PCA-ICA and some cells are segmented into "subcells" that we would like to merge together...