MrBayes
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NBISweden
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
I need to use partitioned DNA input (concatenated multiple genes) and fixed topology (species tree from ASTRAL-III without branch lengths) to get all branch lengths (ASTRAL doesn't return terminal branch...
I have been running mrbayes with the stepping stone option for comparison of tree topologies in a server and I reached the limit time in the server, so the analysis...
### What is the current observed behaviour? ### What is the expected/wanted behaviour? ### How may we reproduce this bug? Steps to reproduce the bug: 1. 2. 3. 4. ###...
in mcmc.c, line 12987, if (p->nValues == 1 && strcmp(mp->symPiPr,"Fixed") != 0) { SafeSprintf (&tempStr, &tempStrSize, "\t%s", MbPrintNum(sst[j])); if (AddToPrintString (tempStr) == ERROR) goto errorExit; } there is a warning:...
The original function LnCoalescencePriorPr only supports contemporary tips (i.e. tips sampled at the same time point 0). I have extended it to support serially-sampled tips (i.e. tips sampled temporally /...
Since the released version 3.2.7a, I have added some new features (mostly clock models), and mentioned the upcoming release version 3.2.8 in some papers. But people who read those papers...
- build method: [bioarchlinux repository](https://github.com/BioArchLinux/Packages) - version: 3.2.7 MPI, MPI beagle, begale without MPI, without MPI even git version, and 3.2.6 beagle - OS: Arch Linux - sequences file: see...
### What is the current observed behaviour? MCMC runs look normal up to a certain point in which there is a significan jump in the likelihood, and some parameters, typically...
### What is the current observed behaviour? The configure scripts detects the extensions provided by the build host CPU and builds code utilizing them, disregarding the characteristics of the target...
Hello, maybe we completely misunderstand something, but we are dealing with the problem at the moment that I would define as a lack of convergence in 3.2.7 version compared to...
