MultiQC
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MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Whilst I think that using the input filenames for samples is still a good default strategy, people commonly complain about parallel logs being overwritten. It could be good if a...
It would be nice to have a default [click event](http://api.highcharts.com/highcharts#series.events.click) for plots if no other is specified. This could show a drop-down menu with series-specific actions? _eg.:_ Show only this...
It would be nice to be able to specify more attributes for scatter points than just colour.
### Description of feature We have a workflow that uses fastp only to generate QC metrics for our FASTQs, but does not use the modified/filtered FASTQ downstream. Would it be...
**Is your feature request related to a problem? Please describe.** We'd like to be able to group our samples by diagnosis to better see trends visually, as opposed to the...
Fixes: https://github.com/MultiQC/MultiQC/issues/3431 If e.g. 80% of reads have 50x coverage, and we want to show 40x coverage, we know at least 80% of reads have 40x coverage. This is particularly...
### Name of the tool SVanalyser/SVbenchmark ### Tool homepage or repository https://github.com/nhansen/SVanalyzer ### Tool description SVbenchmark compares a set of “test” structural variants in VCF format to a known truth...
### Name of the tool rtgtools/vcfeval ### Tool homepage or repository https://github.com/RealTimeGenomics/rtg-tools ### Tool description RTG vcfeval performs variant comparison at the haplotype level, that is, it determines whether the...
### Description of bug I ran the multiqc 1.32 version and I noticed that it contains bracken content inside kraken section of the multiqc report. Example: ================================================================== **multiqc 1.32** ==================================================================...
### Description of bug https://github.com/MultiQC/MultiQC/pull/1810 identified that the mosdepth output can be missing values and implemented a fix. https://github.com/MultiQC/MultiQC/pull/1931 tried to address https://github.com/MultiQC/MultiQC/issues/1868#issuecomment-1565428979 but did not consider that a missing...
