Max Sprang

icon indicating a website link https://www.researchgate.net/profile/Maximilian-Sprang

icon company UMC JGU icon location Mainz icon location Junior Group Lead @ AG Mayer, UMC Mainz I am especially interested in functional genomics, machine learning and generative AI for Bio sequences.

Results 4 comments of Max Sprang

Error in .local(x, na.rm, dims, ...) : object 'R_dense_rowSums' not found

Hi, I encountered a similar problem when calling getBackgroundPeaks, or any doenstream task (I also encountered it when calling the filter function but didn't need it anyway, as when running...

Feature barcodes and multiplex files

Hi thanks for the fast answer! Here is my command: ``` run-trust4 -b "$input_bam" -o "$output_dir" -f "TRUST4/mouse/GRCm38_bcrtcr.fa" --ref "TRUST4/mouse/mouse_IMGT+C.fa" --barcode "fb:Z:CTTGCCGCATGTCAT" ``` I don't want to concatenate, I only...

Feature barcodes and multiplex files

Hi, but I am interested in getting the info for each of the feature barcode separately (there are two, the cells were labeled with an antibody for demultiplexing)

Feature barcodes and multiplex files

I'd be interested in BCR/TCR by sample so by X and Y over all cells in teh given sample