Thomas Roder
Thomas Roder
**Describe the bug** PEPPAN fails with `"UnboundLocalError: local variable 'name' referenced before assignment"` **To Reproduce** 1) Install PEPPAN ```bash # install via conda conda config --add channels defaults conda config...
I get this error message: ```text $ PEPPAN --testunit $ PEPPAN_parser -g examples/ST131.PEPPAN.gff -s examples/PEPPAN_out -t -c -a 95 (...) 2023-02-21 15:11:25.606204 Run BLASTn starts 2023-02-21 15:11:28.556587 Run BLASTn finishes....
I'd like to suggest a new ReferenceList for Swiss people. The typical Swiss set-up is a dual LNB with Astra 19.2°E (world channels) and Hotbird 13E (Swiss channels). The only...
**Feature summary** Thanks for creating this great tool! I would like to create low-FPS APNGs using Kooha. I saw that this was a planned feature in [2.0.0 TODO list #75](https://github.com/SeaDve/Kooha/issues/75)...
First off, thanks for this fantastic package! I want to use it as a dependency in python, and it would be better if I could install without npm, as a...
It would be great to have objective measures of how well two dendrogram match. Are you considering to add something equivalent to Tal Galili's [cor.dendlist](https://www.rdocumentation.org/packages/dendextend/versions/1.13.4/topics/cor.dendlist) (mainly the cophenetic and baker...
I have dendrograms with hundreds of entries. Thus, I need a higher plot size. I suggest to add `figsize` or `figheight` as a parameter: ``` def gen_tangle(a, b, labelsA=None, labelsB=None,...
I ran this code in two separate Python consoles: ```python from mezmorize import Cache cache = Cache(CACHE_TYPE='filesystem', CACHE_DIR='/tmp/mezmorize') @cache.memoize() def fn(a, b): print('I ran!') pass ``` The function was run...
Dear ATLAS team We really like your pipeline and have used it for short-read metagenome datasets. For highly accurate long reads, it seems to us that different assemblers and binners...
Dear @ggonnella I would like to make your SVGs interactive in the browser. However, the SVG does not remember the names of the edges and nodes. If it's easy to...