Thomas Roder

My pleasure. Feel free to use it however you like! (I.e., add it to your repo or make an official Docker image.)

I would be happy to create a docker image. In the paper, you say PyPy makes it even faster, so I will build an image based on their [container](https://hub.docker.com/_/pypy). Does...

This tool was pretty difficult to install. It requires a specific gcc compiler, pypy and Rpython for Python 2 apparently... I only managed to install it with conda, not with...

I dumped some stuff here: https://github.com/zheminzhou/PEPPAN/blob/c2c8a19a12dc17664737779b35b02ccd575ebab3/modules/uberBlast.py#L552 How I dumped: ```python if not os.path.isfile(f'{aaMatch}.{id}'): import random, string with open(f'logs/{"".join(random.choice(string.ascii_letters) for i in range(10))}', 'w') as f: f.write(f'CMD= {diamond_cmd}\n') f.write(f'CMD_split= {diamond_cmd.split()}\n') f.write(f'STDOUT:\n')...

I wrote a section on this topic on [Scoary2's wiki](https://github.com/MrTomRod/scoary-2/wiki/Understanding-the-p-values)!

Can you share all the relevant _p_-values, and if possible a phylogenetic tree which contains all relevant information (gene and trait)?

Maybe my Dockerfile fixes your problem: https://github.com/AntonBankevich/LJA/issues/37

Cool! I don't have any experience with gstreamer. Since you've been experimenting with APNG, could you share your profile?

I expected this answer. 😅 Unfortunately, I don't have the bandwidth either.

Dear Anton and Yann I ran into the same issue and can share my [raw data](https://cloud.bioinformatics.unibe.ch/index.php/s/LCZoDsDqpg5JBQk?path=%2Fbc2037--bc2037)! What is nice is that it's a bacterial genome dataset: only 116 MB of...