Crash during "Export to GFA and compressed contigs" step

[YannDussert]

Hi,

First, thanks for developing LJA!

I am trying to run LJA on my HiFi data, using the command: lja -o lja_defPars --diploid -t 30 --reads hifi.fastq.gz

The program crashes at the "Export to GFA and compressed contigs" step, with the following error: terminate called after throwing an instance of 'std::out_of_range' what(): map::at

This looks similar to the crash described by @peterdfields in issue #4 but I am not sure how it was resolved. Unfortunately, I cannot share the raw data. I tried to attach the gzipped dbg.log file, but it is too large for github.

Best regards, Yann