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FEATURE: Use processed suite2p output to run registration only

Open horsto opened this issue 2 years ago • 2 comments

Feature you'd like to see:

I have previously run suite2p over data and curated the output / used the analysis results. Now I want to create videos from the motion corrected output. What is the easiest way to use the already processed output to (re-)construct motion corrected tifs?

Attempted alternative approaches:

I can load the .ops files and "skip" cell detection and deconvolution, but is there a way to use the motion correction info in the .ops output files to reconstruct the registered tifs (so I can show the corrected data that the output is based upon)?

Additional Context

No response

horsto avatar Jun 19 '23 13:06 horsto

You can load the registered binary and save to tiff using tifffile, pillow, or skimage

darikoneil avatar Jul 17 '23 14:07 darikoneil

I don't have the registered binary.

horsto avatar Jul 17 '23 14:07 horsto