rastermap

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Hi, thank you for the very nice repository! I was trying to run the demo notebook (run_rastermap.ipynb) from the Github source code. I ran into some issues, and have posted...

seankmartin

error on launching, please see the error below:

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Traceback (most recent call last): File "/home/idl/anaconda3/envs/rastermap/lib/python3.9/runpy.py", line 197, in _run_module_as_main return _run_code(code, main_globals, None, File "/home/idl/anaconda3/envs/rastermap/lib/python3.9/runpy.py", line 87, in _run_code exec(code, run_globals) File "/home/idl/anaconda3/envs/rastermap/lib/python3.9/site-packages/rastermap/__main__.py", line 2, in from rastermap...

brakela

discretizing rastermap clusters with kmeans etc?

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Hi, Is there an easy way that you know of, or could suggest, to discretize Rastermap groups with kmeans or random forest or something like this, and to optimize cluster...

vickerse1

envirnoment.yml

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I had to change line 12 from: - pyqtgraph=0.11.0rc0 to: - pyqtgraph==0.11.0rc0 in order to make it work.

bartulem

Thanks for developing rastermap function! What I want is to output the neuron sort number of the rastermap in Suite2p. I tried 2 ways, matlab and python code, buy both...

fangyue1992

associated paper

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Hey Marius and Carsen, Thanks for the cool talk. I can't seem to find a paper outlining the exact steps you follow to compute the rastermap or comparison with other...

vruetten

HI Carsen, I've used rastermap in a supplemental figure and I'd like to appropriately credit it. Is there a preferred citation for it? I saw the other issue about a...

djoshea

When running rastermap with default settings and alpha of 1.43 on a dataset with 2 time series that have a standard deviation of 0, the resulting error occurs. ```python size...

Vanwalleghem

When loading a new dataset using "Load Data Matrix" while a dataset is already loaded results in the following error ```Python Traceback (most recent call last): File "C:\ProgramData\Anaconda3\envs\mouseland\lib\site-packages\rastermap\gui.py", line 629,...

Vanwalleghem

Hi, Thanks for some great tools. I just wanted to report that when I have both FaceMap an rastermap on the matlabpath at the same time, I receive the following...

ehennestad