[FEATURE] Extracting information from original image using Cellpose masks

[sakethkar]

Hello! I am working with some NanoString datasets outside their AtoMx SIP. I have used Cellpose GUI to run some segmentations which I like, but I am unable to extract any information from the resulting masks, viz. pixel co-ordinates of the cells, transcript locations etc.

I would also like to extract information (such as staining intensities) from the original image using Cellpose generated masks. Any help is appreciated. Thanks!