Moritz Kern

This PR collects deprecated features to be finally removed from elephant. This reverts many deprecation warnings introduced here: #316 - removed deprecation from `unitary_event_analysis.py`

[Bug] IndexError in spike_train_synchrony.py, annotate_synchrofacts

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This Bug was originally discovered by @skrausse , thank you for reporting. **Describe the bug** When trying to use the `delete_synchrofacts` method from `Synchrotool` class in `spike_train_synchrony.py`, in specific cases...

This PR is a part of the integration of elephant in ebrains phase 3. This step sets up a repository mirrored to gitlab.ebrains.eu. (https://gitlab.ebrains.eu/neural-ensemble/elephant/) The added `ebrains.yml` will sync this...

add trigger to run gitlab spack builds

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This PR will add a gitlab CI workflow to trigger elephant spack build spack build on ebrains.

# Bug Documentation build with sphinx 5.3.0 (5.2.3 works) does not render math expressions properly, see: See: https://viziphant.readthedocs.io/en/latest/toctree/gpfa/viziphant.gpfa.plot_trajectories_spikeplay.html#viziphant.gpfa.plot_trajectories_spikeplay # Fix In previous Sphinx releases, mathjax was the default html math...

Fix documentation, remove version cap on sphinxcontrib-bibtex

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This PR removes the version cap on `sphinxcontrib-bibtex==1.0.0`. Newer versions of `sphinxcontrib-bibtex` require the path to the `.bib` file to be specified in the configuration file for the documentation (conf.py)....

This PR fixes #55 which occurred in relation with api changes in matplotlib 3.6.1. **Bug:** - `gca()` no longer accepts keyword arguments. **Fix:** - replace `gca()` with `add_subplot()`

- the `set-output` command will be disabled 31st May 2023, see: [changelog](https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/) This is similar to Neo PR [#1191](https://github.com/NeuralEnsemble/python-neo/pull/1191)

Bug: viziphant.gpfa plot_trajectories with matplotlib-3.6.2

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Tested with: - python: 3.8.10 - viziphant: 0.2.0 - matplotlib: 3.6.2 The following example: ```python import numpy as np import quantities as pq from elephant.gpfa import GPFA from elephant.spike_train_generation import...

- added two example visualizations to the `README.md`. - see: https://github.com/INM-6/viziphant/tree/feature/examples_readme - [ ] find and add a better example as the second figure