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LiuMin

bwa index problem when indexing files with large size

Hello,sorry to bother you. I have the same problem, have you solved it?

bwa index problem when indexing files with large size

I‘m so glad to get your reply, I would like to ask is it reasonable to split the reference like this? Will it affect the result of mapping?

bwa index problem when indexing files with large size

ok, thank you,you are so nice.

short reads align to the assembled contig

hi, heng. I'm glad to receive your reply, because I don't have so much memory to deal with large ref. I want to split large reference genomes like minimap2, divide...

Issue using Salmon quant with BAM files

> Hey, I'm having the same kind of problem. > > I aligned my PE reads against the transcriptome using BWA-mem and then sorted them by coordinates (as a regular...