MDF

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CURRENTLY the MDF_0 format : my_node: { functions: { my_function_expression: { value: “expression” } my_function_ontology: { function: ontology_function_name args: {arg1: value, arg2: value} } } CLOSEST TO CURRENT STANDARD: my_node:...

Shanka123

Function 'function' field is dict instead of str

4

Since d1f49379651d80613e2b2181a0b6e91171a016a2, the 'function' field of Function is a dict (changed from str) expected to contain args and their values. ex: https://github.com/ModECI/MDF/blob/48e2b2e22188cb83bbe36e66f9692f411ae70f02/examples/MDF/translation/Translated_ABCD.json#L122-L130 Why use this dictionary format instead of handling...

kmantel

Complex connections

4

Most data formats assume straightforward pre and post synaptic connections, how would MDF deal with more complex cases where synapses can be made up of 3 elements (say a teaching...

Helveg

Scalability questions

2

Hi there! I have some questions about scalability of MDF: while connectomes between specific cells can usually be stored as some sort of sparse matrix with the from and to...

Helveg

Exp in expressions

1

I have written this piece of code: ``` exp_node = Node(id="exp_node") exp_node.parameters.append(Parameter(id="period", value=3.14)) s1 = Parameter( id="level", default_initial_value=1, time_derivative="1.27 * period * rate" ) exp_node.parameters.append(s1) s2 = Parameter( id="rate", default_initial_value=1,...

FatimaArshad-DS

Control in MDF

1

This is an issue to track the features needed/issues to be resolved in MDF for control: 1. Conditional node parameters (e.g. if another node Foo's value is 1, then node...

SamKG

Currently, we do not perform any linting of MDF models to ensure they conform to constraints within the specification. We currently accept any model that conforms to MDF's JSON schema...

davidt0x

Switched RLC Circuit Example

1

### Things Currently in the Pull Request 1. Python File, Yaml, Json, test.sh updated, graph and plot moved to images folder for the Switched RLC(single node) example ### Things to...

rimjhimittal

Create a Streamlit based app to run a generic MDF model

3

Being worked on by @rimjhimittal as part of Outreachy @rimjhimittal I've just thought, in addition to tabs below the list of parameters for 1) traces of outputs of the ran...

pgleeson

pgleeson