Nail Ibrahimli

## Review checklist for @Mirmix ### Conflict of interest - [x] I confirm that I have read the [JOSS conflict of interest (COI) policy](https://github.com/openjournals/joss/blob/master/COI.md) and that: I have no COIs...

Thanks for the efforts. Here is my review of the paper. What we mean by research software JOSS publishes articles about research software. This definition includes software that: solves complex...

Thanks for the updates and for addressing some of my aforementioned issues. Although there are still a few unaddressed issues, to not repeat myself here (and since the main updates...

@editorialbot generate pdf

Hi, thanks for the updates. I ran the code with docker, Pangolin GUI was not working with the default docker run command (most probably due to the fact that the...

Thanks for your clarifying comments. Regarding the time performance: I have tried to run your data on TUMMONO seq14 (choose this one since it is a relatively small and SIMPLE...