Miguel Cosenza-Contreras
Miguel Cosenza-Contreras
Dear Fragpipe team, As always, many thanks for the amazing work you do developing maintaining Fragpipe and all its tools. Would it be possible to offer intensity grouping by modified...
Dear FragPipe team, I am working with a phenotype-specific proteogenomic database created using a customized Galaxy pipeline for fetching SRA RNAseq data, genome mapping, variant calling, and database creation with...
Hello, We use iRT peptides in almost all our sample preps as a quality control for both our chromatography and identifications. It would be interesting for us to be able...
Dear alphamap team, First, thanks for mantaining such a useful tool! I have noticed what I think is a bug when attempting to load Fragpipe outputs to AlphaMap. After writing...
Hello. I am very glad to know about this package. I am working on a way to represent peptide coverage over a protein sequence (i. e. represent peptides identified by...
Hello, I already found a reference to this error message here #242 but it doesn't seem to apply to my particular issue (I have already tested by setting the protein...
Hello, I am testing a sub clustering approach as described below: 1. Execute a Clust on data set X(1 tabular file). 2. Get genes from an interesting cluster Y. 3....
Dear tidyverse team, I think I have found an unexpected behavior in `str_sub` that I want to report, because I didn't find anything like this in the issue section. Imagine...
Dear developers, We are excited about the results we got with pFind on our label-free data. We are heavy users of TMT labelling and I was wondering if you have...
- Project Accession: [PXD011153] - URL Project: [https://www.ebi.ac.uk/pride/archive/projects/PXD011153] - PubMed Accession: [30728824]