Miguel Cosenza-Contreras

I just noticed a similar behavior between version 1.10 and 1.12. The exact same input data produce totally different results. Version 1.10 produces 6 clusters from 299 proteins while version...

Dear Huiyin (@huiyinc), I am very sorry for the long response time. I am answering your questions now: Yes, I would like to be able to distiguish the same peptide...

Hello Paul, I have indeed done some small progress on this front. I have written a couple of functions using a similar sintax and that output a similar data structure...

Hello Paul, Sorry for the late reply, yes, I would be happy to share two sample inputs from MaxQuant for you to test the functions in our scripts. Sadly they...

Hello Paul, I really like what you managed to do with the visualization of the peptides. My current attempt looks like this (including `drawProteins` in the workflow) which is not...

Hello Lukas, Many thanks for taking a look into this and for your answer. I am pasting the first 10 lines here: ``` SpecId Label ScanNr ExpMass Mass m_z rt...

Hi Lukas, Many thanks again for taking a look and for your observations! I shall adapt my script then. A more informative error message would have helped indeed, but I...