Moritz E. Beber

Every unix program by default has three streams: input, output, and error. When you pipe something into another program this happens via the input, for example, `cat password.txt | passwd`....

Basically, what we require from identifiers.org is only the database identifier and the respective regular expressions for metabolites, genes, and reactions. This information could easily be read from a flat...

Did you change the file extension to `.txt` so you can easily upload it here or is that also how you uploaded it to the service? In case you haven't,...

Those are a lot of questions 🙂 I will focus on your original one. Please note that reports are currently deleted after a week so maybe that's why they disappear...

> In the attached screenshot and model example I have either 100% SBO, skipped SBO or errored SBO. I.e. on everything which works I have 100%. How does this result...

> This implies that a model should contain sink and demand reactions, which seems a bit odd to me. Yes, that shouldn't be the case, of course.

Should those be three separate discussions? 1. I talked to @matthiaskoenig and annotating a model with taxonomy information can already be done although not mandatory, nor widely practiced, nor well...

Hi Hoang, Repairing `memote online` is part of #616 which will hopefully go in soon. > In addition, how can I add an existing model (e.g., is there a command...

You can read a little bit more about the whole workflow [in the docs](https://memote.readthedocs.io/en/latest/getting_started.html#ci-tested-online-and-public-workflow). I concede that they could use a bit more detailed explanations. Basically, `model_path` shows where to...

Great, thank you for the description @mihai-sysbio. Could you say something about how you would expect to provide this information? It seems a bit intricate just for command line arguments...