Moritz E. Beber

What do you think @ChristianLieven ? A test for auxotrophies of a fixed list of amino acids (and maybe vitamines) sounds reasonable to me. Slight annoyance is that there are...

You certainly can for your use-case but if we introduce a new general memote test, then I wouldn't rule them out. If you just want to introduce a custom test,...

I think `test_direct_metabolites_in_biomass` (or its helper functions) are definitely a good fit. `test_biomass_precursors_open_production` is suitable for finding blocked precursors. It will not tell you whether a metabolite is directly imported...

Hi @zoey-rw, That's an excellent question! I'm afraid that I'm not aware of such a resource. The scope for the MEMOTE project was already pretty big so we decided to...

The exact protonation of reactants and products can be quite hard to decide. I don't know your background so excuse me if I'm telling you obvious things. In the same...

> I am unsure how allowing non-integer formulae will fix this, it is a good first step though. I believe the idea is that formulae and charges are weighted averages...

Hi Prashant, I can currently not reproduce your issue on linux. At the top of your error message it says: ``` fatal: --local can only be used inside a git...

Ah, without a git repository should actually be the easy and working case. Can you please run the following command in your conda environment: ```bash pip install -U cobra pytest...

Also, at any point feel free to use the web service https://memote.io :slightly_smiling_face:

In your module where you define the custom tests to be run, you could add a [pytest fixture](https://docs.pytest.org/en/stable/fixture.html) that computes a solution. Then you use that solution in your test...