BioPhi
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Merck
BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody seque...
following conda install instructions the system throws an error when computing humanness AttributeError: 'Engine' object has no attribute 'cursor' [2024-02-06 13:58:11,833: ERROR/ForkPoolWorker-14] Task biophi.humanization.web.tasks.humanness_task[9fe7dc93-8651-49ab-baec-f3a0386376f5] raised unexpected: HumannessTaskError("'Engine' object has no...
Following step 2 of the install (https://github.com/Merck/BioPhi#2-install-biophi-using-conda) results in the following: Alternatively using docker, the provided code is asking for additional arguments. Admittedly I have very limited experience with docker....
how to set the OASis prevalence threshold when using biophi on command line? I don't the option in biophi sapiens command. Thanks,
Hello, I tried multiple options, but regardless of number of iterations or limit parameter I am getting always the same number of mutations introduced. Humanness score indeed increases, but I...
Task is waiting in queue. This seems to be a very recurrent problem over the last few days. I don't seem to be able to get the site to work!!
Once again, the server stays at "in queue" after submitting the job. No results return.
I used the server sometime earlier this year and it went find and will get results back in couple of minutes. However, lately I submitted a couple of calculations to...
Recently the server was resetted to resolve this issue. After 3 weeks of use, the issue arose once more. Could you please reset the server on the website?
