Matthias Lienhard

This is still an issue, I got a syntax error on run_miso.py, line 54 print "Error: No GFF %s" %(gff_index_filename) since python3 has become the default on our system.

Apparently, the number of genes has to be above 128 for the example to run. I am using - python 3.9.7 - numpy 1.20.3 - diffxpy v0.7.4+21.g12f1286

I'll lock into this at some point but I have little time currently. Does this happen with all songs, or only some? If so, which? CarnivoreD ***@***.***> schrieb am Sa.,...

I guess these are separate issues, the TypeError: argument 1 must be 2-item sequence, not generator is probably related to the PIL version, but can be easily fixed. The other...

@anetteIversen can you please test the outcome with v0.1.11 (install from git) I tested on macbook, and all urls you sent worked (also in the gui).

Hi, thank you for reporting. I will leave this open until I fixed the version for the dependencies.

Dear Jérémy, thanks for reaching out. While such functionality is not directly implemented, at least the second point would be quite straight forward to achieve with isotools. The Transcriptome.rarefaction function...

To my knowledge this is not possible right now. The sections (categories) are sorted alphabetically though, so one way of controlling the order is to (manually) add numbers to the...