MatthewThe

I'm running into the same issue, also with v20.04.1+SLURM and one of the jobs continuing to run even though it is listed as failed. The error occurs exactly after 7...

In my case, the problem turned out to be that SLURM - for some unknown weird reason - submitted the jobs to a different queue than the one specified by...

Looks like the first problem could be caused by the fact that there are no decoy PSMs. I will create better error handling for this. The second problem might be...

We don't have a dedicated converter for MS Amanda at the moment, but it shouldn't be too hard to do. 1. You could try the [OpenMS PercolatorAdapter](https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/nightly/html/TOPP_PercolatorAdapter.html), which should technically...

For future reference: here is a guide on how to run percolator with an example dataset: https://github.com/percolator/percolator/wiki/Example

The early stopping criterion is only checked if you set the `--quick-validation` parameter, otherwise it will indeed run all 10 iterations.

Seems like the problem was with the proteinIds not being printed out correctly (#242). For me, it works as expected now.

Yes, the problem is that the library `libtokyocabinet.so.9` is missing. You can install it with `sudo apt-get install -y libtokyocabinet-dev`.

Seems like the problem was with the proteinIds not being printed out correctly (#242). For me, it works as expected now.

Using `perf stat` the cause seems to be page-faults which increase 10 fold for the multi-threaded program. Cache misses seem to be roughly equal.