Matthew Ward

sslVerify error when running TS v2

4

An ssl certification error is causing Total Segmentator to crash during the running of the script. The error log suggests that the script is trying to communicate with host="objects.githubusercontent.com" which...

Strange output when registering brain MRI to CT scan

1

Hi I'm trying to register an MRI brain image to a CT scan but the result of elastix is the following nonsensical image:  Any idea what might be causing...

I want to stop the module adding INFO messages to my log file. However, the module doesn't use its own logger rather the root logger (logging.basicConfig) and sets the level...

Validation files not being saved

8

After successfully training two anatomical models, I've moved onto a third model which I'm having some issues with. For starters, after 110 epochs, the pseudo dice score for both the...

checks binary file is non-empty

14

A Pinnacle plan may contain beams with no dose. This causes the export to fail at line 335 of rtdose.py when an attempt is made to read 4 bytes of...

In the plan.Trial file found within each plan folder for a patient treated in Pinnacle, the rtdose.py script seems to interpret the DoseVolume reference to XDR: as the corresponding binary...