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                                            MassaBob

make it easier to get gene IDs by exon

Is there anything new on this issue? The current workaround with finding a transcript index and then using this to get the exon indices is not quite elegant.

FPKM values of 0 in single samples in single genes

Hi Geo, thanks for the fast reply. Here are the commands I used to extract and to stringtie read data for the SOX2 region (reference hg38): $ samtools view -h...