MaryGoAround

Hi I could run PureCN on one cell line (tumour) ``` for BAM in $TUMOR_BAMS; do SAMPLE_ID=$(basename $BAM .bam) VCF_PATH="tumor.vcf.gz" Rscript $PURECN/PureCN.R --out output \ --tumor coverage_loess.txt.gz \ --sampleid $SAMPLE_ID...

Hi Finally I managed to run PureCN but I get an error after hours ``` [@login006 ]$ more purecn.out INFO [2024-10-01 10:25:46] Loading PureCN 2.10.0... INFO [2024-10-01 10:28:34] Mean coverages:...

Interpreting the results

1

Hi For `WGS` with `no control`, from which part of the results I can say if there is a `duplication` in a certain chromosome? Thanks a lot