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                                            MaryGoAround

coOncoplot for GISTIC2 results

Hello Is it possible now to have mafCompare function to support gistic objects?

Can I still use clonevol on my data

Sorry can I use your software for oesophageal adenocarcinoma? Because I noticed people saying mono-clonal phrase when using your software I am not sure my cancer is mono or polyclonal

Can I still use clonevol on my data

Yes, thank you Sorry I run your software on 17 responders to chemo and 33 non-responders All non matched of course I got this [model.pdf](https://github.com/hdng/clonevol/files/4717021/model.pdf) res are responders and pre...

I need advice when there is no normal

Hi Finally I could got a plot for my tumour (cell line) using this command for BAM in $TUMOR_BAMS; do SAMPLE_ID=$(basename $BAM .bam) VCF_PATH="tumor.vcf.gz" Rscript $PURECN/PureCN.R --out output \ --tumor...