Marwan

updaing anndata from 0.7.6 to anndata 0.8 solved it for me

Thanks a lot that is very helpful and inspiring. for 1- you are right i haven't scaled the genes for 2- i am was trying to understand if i compute...

sorry if i wasn't clear again, my question is about generation the ligand-receptor interactions df for example simply here for a single cell data object : `li.mt.rank_aggregate(adata, groupby='celltype', expr_prop=0.1, verbose=True)`...

Thank you very much for your response. In fact, I am trying to benchmark and compare the different results that come from computing the CCC (cell-cell communication) on single-cell or...

i got the same error and i would like to know if i need to reorder only the header withi the vcf file to match the bam or also the...

Thanks a lot for your response, @johannesostner Actually it's not a matter of normalisation ,For example checking the effect of age( in years) as a continuous variable , I observe...

Hi, I was wondering if this will be implemented soon? I have done all my analysis in Python but was asked for some interaction terms and i was wondering if...

hi , i was wondering if there is any updates on this? i shared couple of month ago the data but never got any answer back.

Thanks! have a nice day

Hi, she can send me by email and I will share it , and around 2 month ago i shared it with "Xichen Wu