Marlies Jilles Francine Goedknegt

output in nexus file

4

Is it possible to convert the output file from .tree format to a .nexus format? Several programs for further analysis require the file to be in nexus format. However, standard...

Implementing RF calculation

1

When calculating the RF distance between several trees, how are the values "found branches", "missed branches", and "not found branches" calculated? If "found branches" is the number of identical branches...

Directory not found

2

Hi, when downloading the zip file "chromeister-1.5.a.zip" and unzipping it, I cannot install it by running the given command: cd chromeister && make all -C src/ && python3 -m venv...

linclust on fasta file or DB file?

1

Hi, I want to cluster a large dataset of DNA sequences. Must I first convert my fasta file into a DB format file? As is written here: https://github.com/soedinglab/MMseqs2/wiki#linclust, or can...