Mario Stanke
Apparently, this is a result of 4Byte `int` not allowing for positions that are 2^31 or larger. Error message ``` examining piece 1..-1928087540 (-1928087540 bp) terminate called after throwing an...
These tests to measure the accuracy on large regions of the human genome are not optimized to the end: 1. `optimize_augustus.pl` should be run as well. 2. The default `/Constant/decomp_num_steps=1`...
Anandkumar Surendrarao wrote on July25th, 2018: In a few cases, I see this in my STDERR file: "augustus: ERROR Invalid block no. in SubstateModel::blockNoOfB"
This concerns exonpart hints on unknown strand, like this: ``` Scaffold_0 w2h ep 4600 4610 5.400 . . src=W ``` The hint can be counted as supporting a CDS (correctly)...
as it appears to have become a standard to use lower-case softmasking
check whether this has to do with a its different genetic code.
Use Ubuntu 22.04 image for testing on GitHub-hosted runner
When a training process does not properly finish (e.g. multiple training processes write to the same species' directory, an interruption), augustus can come up with cryptic error messages. An example...