Mario Stanke

We have described it in this book chapter: https://math-inf.uni-greifswald.de/storages/uni-greifswald/fakultaet/mnf/mathinf/stanke/augustus_wrp.pdf The relevant part is around the key word: `createAugustusJoblist.pl` It creates command lines that can be run in parallel, e.g. using...

I can't see why from the data you are sending. Are these two species in ../butterflies_4spec.db? You could check the presence of these two genomes with sqlite3 -header ../butterflies_4spec.db "\...

Yes, this year, and likely in the next few days. Am Di., 10. Nov. 2020 um 17:50 Uhr schrieb santiagorevale < [email protected]>: > Hi there, > > I've noticed that...

I would like to reproduce the bug. Then I should be able to fix it. You you give me an input file that causes the error?

Thanks. ```augustus --species=aspergillus_nidulans 47Farrow.fa``` does not fail on my laptop. What version or commit are you using?

I neither got a crash when using version 3.3.3. nor the current master version. Neither did a memory checking tool find any issue with that particular command on that data....

There is software, like the parser https://agat.readthedocs.io/en/latest/gxf.html that allows comments elsewhere than at at the start of the line. The Sanger allows such in-line comments in their GFF spec: https://web.archive.org/web/20010208224442/http://www.sanger.ac.uk:80/Software/formats/GFF/GFF_Spec.shtml...

It seems to be for different reasons. @dhonsel , can you try to eliminate some? The case below appears to reoccur several times. Maybe this this has to do with...

Of course...

If you have large genome and hint input, you can reduce memory consumption at will by - splitting the genome into chunks and - reducing the hints to refer to...