Margarita Kapustina

icon indicating a website link https://www.cembrowskilab.com/

icon company University of British Columbia icon location Vancouver, BC icon location PhD student in Neuroscience at the University of British Columbia

Results 3 comments of Margarita Kapustina

How to use ImageDimPlot to show multiple sections

I would figure out what the FOVs are named in your spatial object by running `unique(data_integrate@images)` and seeing what it says under "Key" Then do the following, not using split.by...

How to use ImageDimPlot to show multiple sections

something like this should work: `ImageDimPlot(object, fov = c('fov', 'fov.2', 'fov.3', 'fov.4'), molecules = c('Cplx3', 'Ccn2'))` ^replace your FOVs with your appropriate FOV names

How to use ImageDimPlot to show multiple sections

Hi yxue88, I would try to see if you can plot the molecules for individual FOVs first, and see if they plot as expected. I am suspecting that you may...