MarHerf

Full_sseq returns sequence with N or X

6

Hello, I need the sequence from part of my Blastp hits. The full_sseq option from custom outfmt 6 returns the sequence with variable amino acids. For example: MIRSRSRATRGVRMKTFKATMTTAMLALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPVGKRDPFRSPIDELGPVNANPVAACNEPLCSFDLDQLKLVAVVTGDASPVAMVEDPAGRGHIVRRNTRMGRQGGKVTQILRDSVTVTEVFSGNGEIIKNPVTLQLKPDAKQDPAYNMMTGRNYGE I'm using...