Manu Setty
Manu Setty
Can you please try using the Github `main` branch? We have updated the repository to use `pygam` instead of `R gam`
This is surprising since `R` should no longer be required. Do you have a full traceback that you can share?
Thank you - Looks like the installation is still on the previous version. Can you please try installing the `main` branch again? You will need to clone the repository from...
You can try the following: Change your conda environment appropriately using `conda activate ` Following this ` git clone https://github.com/dpeerlab/Palantir.git cd Palantir pip install . ` This should help you...
`terminal_states` should be a `pandas.Series` where the index are the cell identifiers i.e, entries in `ad.obs_names` and the values should be name of branches. For question 2, can you try...
1. The criteria for determination of index / terminal cells is prior biological knowledge and expression of known markers of terminal states. One can pick the extreme of diffusion component...
This looks like a environment issues. Can you perhaps try by rebuilding your conda environment.?
sudo is specific to Linux / Unix based systems. I believe you should be able to install on Windows without using the sudo: `pip3 install . `. If you see...
Wishbone needs python3. So if your pip is pointing to python3, it should work. Otherwise you will need to install python3. You do not need to be in specific directory...
The screenshot did not come through. Can you send it again.