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                                            Manonanthini

Reference genome issues in msisensor and number of somatic sites prediction in msisensor2

I have tried hg38 aligned bam file with same reference genome hg38 as well as hg19 aligned bam file with hg19 reference genome using 'scan' module in msisensor.

Reference genome issues in msisensor and number of somatic sites prediction in msisensor2

[msierror.txt](https://github.com/ding-lab/msisensor/files/3928191/msierror.txt) Hi , Is there any specific reference genome i have to use? I used ucsc hg38 and hg19 but the program is getting aborted before ending .Please guide me...