MetONTIIME

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import fasta files

3

Hi, Thank you for making a pipeline for nanopore reads analysis. I have some fasta sequence files from the nanopore sequencer that I want to analyse using the pipeline. I...

anilchauhanhp9

Missing `fromPath` parameter -- Check script 'metontiime2.nf'

1

Hello It is my first time trying MetONTIIME and I keep encountering an error. I have read through issues on this page and found similar ones (such as https://forum.qiime2.org/t/error-using-metontiime-missing-frompath-parameter/28345 and...

stephaniekoo

Looking for a pre-taxonomic assignment OTU table

1

Hello, I want to have an OTU table in which OTUs are identified by feature id and/or consensus sequence instead of by an assigned taxonomy (so that I can do...

irc47

concatenateFastq process wouldn't recognize fastq.gz file in the working directory

8

I tried to run the pipeline (https://github.com/MaestSi/MetONTIIME.git) using the following command: `nextflow -c test.conf run $INSTALL_DIR/MetONTIIME/metontiime2.nf -profile singularity` where in the test.conf I changed the following parameters to be my...

yshen16

Chimera & sequence error removal

1

Hi Simone, I've run the full pipeline and as I dig into my results I've begun to think more about sequence errors, chimeras, and contamination identification/removal. Until now, I have...

isa-wilson