gnomeR

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Add summarize by patient

2

**What changes are proposed in this pull request?** - Copied function & tests from `summarize_by_gene()` and modified accordingly - If pt has alteration on any sample, it counts as an...

jalavery

**What changes are proposed in this pull request?** Added in "by" variable to subset_by_frequency() function **If there is an GitHub issue associated with this pull request, please provide link.** https://github.com/MSKCC-Epi-Bio/gnomeR/pull/333...

toumban1

This will work similarly to `summarize_by_gene()` where if the patient has an alt on any provided sample, they will count as a 1 for that gene. The `summarize_by_gene()` function can...

karissawhiting

**What changes are proposed in this pull request?** A new exported helper function which allows users to identify and rename specific point mutations. **If there is an GitHub issue associated...

hfuchs5

Hello! These functions from broom.helpers will be deprecated, in favor of a simpler selecting schema. It looks like gnomeR imports these functions. FYI @larmarange

ddsjoberg