MRIDude

Failed to build on Ubuntu 20.04

1

c3d from the itk5 branch failed to build Here is the biuld log: [Biuld.log](https://github.com/pyushkevich/c3d/files/9447427/Biuld.log) Here is cmake cache.[CMakeCache.txt](https://github.com/pyushkevich/c3d/files/9447430/CMakeCache.txt) I am compiling on Ubuntu 20.04. I am using ITK 5.2.1. If...

Incorrect output files name for a duel echo image.

1

Hello I have some duel-echo 2D TSE data. When given to dcm2niix, it labels the first each with an e15 and the second echo as e1 when it should be...

bids validator not working properly

7

I have been trying to use the bids_validate flag for dcm2bids. dcm2bids exit with message. > The bids-validator does not seem to work properly. The bids-validator may not be installed...

sqlite3.OperationalError: table associations already exists

4

I am currently running the newest version of pybids. On ubuntu 20.04 and 22.04. I am running three lines of code: `import bids as BIDS layout=BIDS.BIDSLayout('/data/jsp/human2/BidsDataset/PIB') layout.save('/data/jsp/human2/BidsDataset/Scripts/PIBproject') ` I get...

nibabel copying mgz header incorrectly

6

I am currently using nibabel 5.3.2. I wrote a script to makes an edit to an mgz image. After running the script I noticed that nibabel adds what looks like...