MIAOKUI

In the end, the error turns out to be:0 Engines runningTraceback (most recent call last): File "./run_qc.py", line 36, in for cmd in fq_filter: File "/HOME/pp325/software/anaconda2/lib/python2.7/contextlib.py", line 17, in __enter__...

one of the bcbio-ipengine.err is:2017-01-31 16:41:14.120 [IPEngineApp] Using existing profile dir: u'/HOME/pp325/.ipython/profile_928c8988-e790-11e6-8150-74a4b50003ea' 2017-01-31 16:41:14.284 [IPEngineApp] WARNING | url_file u'/HOME/pp325/.ipython/profile_928c8988-e790-11e6-8150-74a4b50003ea/security/ipcontroller-a3fcb3e3-d3ae-46fa-b766-c18504a04ba6-engine.json' not found 2017-01-31 16:41:14.284 [IPEngineApp] WARNING | Waiting up to 960.0...

Then I submit SLURM_engine229c5bdb-ef4f-432c-84ce-659024d0624b. I got this:[pp325@ln31%tianhe2-C pipeline56]$ cat bcbio-ipengine.err.%4463992 2017-01-31 16:55:50.670 [IPEngineApp] Using existing profile dir: u'/HOME/pp325/.ipython/profile_928c8988-e790-11e6-8150-74a4b50003ea' 2017-01-31 16:55:50.684 [IPEngineApp] Loading url_file u'/HOME/pp325/.ipython/profile_928c8988-e790-11e6-8150-74a4b50003ea/security/ipcontroller-a3fcb3e3-d3ae-46fa-b766-c18504a04ba6-engine.json' 2017-01-31 16:55:50.721 [IPEngineApp] Registering with controller...

2017-01-31 16:55:50.671 [IPEngineApp] Using existing profile dir: u'/HOME/pp325/.ipython/profile_928c8988-e790-11e6-8150-74a4b50003ea' 2017-01-31 16:55:50.684 [IPEngineApp] Loading url_file u'/HOME/pp325/.ipython/profile_928c8988-e790-11e6-8150-74a4b50003ea/security/ipcontroller-a3fcb3e3-d3ae-46fa-b766-c18504a04ba6-engine.json' 2017-01-31 16:55:50.722 [IPEngineApp] Registering with controller at tcp://127.0.0.1:60340 2017-01-31 17:11:50.826 [IPEngineApp] CRITICAL | Registration timed out...