Maciej Bartkowiak

Now my S(q,omega) heatmap has the correct limits for Q and omega, but it gets written out with 1000 steps in Q and 33 steps in energy. It should have...

For the record, I did some more testing of Single and Heatmap plots with and without normalisation. Everything worked as expected.

I think that the new code works around the problem of `.` characters in the file name, but fails to recognise the cases where the extension is already at the...

When I run jobs from the GUI, the converter jobs are fine and the output trajectory names are handled correctly. The analysis jobs still have a conflict where `.mda` gets...

With enough effort, I still managed to create some technical issues: 1. At the moment, everything works fine if we have a single trajectory and delete it. However, if I...

One way to address the problem with the projection being changed is: 1. In Controls.py L337 in toggle_projection(), replace ` self._viewer.update_renderer()` with ` self._viewer._iren.Render()` This will stop the placeholder from...

It does not really bother me that we can move the camera around the placeholder, or zoom in and out of it. If we wanted it to be static, we...

I adjusted the `pyproject.toml` file to make sure that: 1. The 3D model .stl files get copied correctly when doing a normal `pip install mdanse_gui` in a fresh virtual environment....

> Looks good, one thing could we make the yellow sphere and ring green so it matches the MDANSE logo? > > Also, the logo disappears when I click the...

At the moment, if I name my output `this.will.work.now`, the analysis job ends up writing to `this_will_work_now.mda`. This is better than what the main branch does (since the main branch...