SHUXIAN

Error was 'No such file or directory' and return code '256'

2

hi; so sorry to bother you my code is: phyloFlash.pl -lib phyloFlash_db -almosteverything -read1 ST2019_10_8_FDME220033526-1r_HNJLMDSX2_L2_clean_1.fastq -read2 ST2019_10_8_FDME220033526-1r_HNJLMDSX2_L2_clean_2.fastq -readlength 150 and the error is [08:51:18] running subcommand: /home/lishuxian/anaconda3/envs/pf/bin/bbmap.sh fast=t minidentity=0.7 -Xmx20g...

simulator.py genome FileNotFoundError: [Errno 2] No such file or directory: 'training_model_profile'

1

https://github.com/bcgsc/NanoSim/issues/11#issue-204760214 This bug happened again: (nanosim_env) lishuxian@tong1:/mnt/md0/LSX/lishuxian/lishuxian/mag/LSX-isolates/Kleb-for-lsx/bin-file$ cat list.fasta.txt | while read line; do /mnt/md0/LSX/lishuxian/lishuxian/mag/LSX-isolates/Kleb-for-lsx/bin-file/NanoSim/src/simulator.py genome --fastq -rg filtered_${line}.fasta -b guppy -n 100000 -t 40 -s 1 ; done running...

Weird Rarecurve

2

library(MicrobiotaProcess) library(ggplot2) library(phyloseq) rm(list=ls()) options(stringsAsFactors = F) setwd("C:/Users/lishu/Desktop/ARG/stin/3.1.1/") getwd() otu

make problem

1

$ make ant -f Clustering/build.xml jar make: ant: Command not found Makefile:15: recipe for target 'Clustering/dist/Clustering.jar' failed make: *** [Clustering/dist/Clustering.jar] Error 127

Cannot upload file

5

Hi, I have tried the https://multiprime.cn/#Home page, and my fasta cannot be uploaded, I checked there are no : , _, |, ", or space in my fasta.  Encloesd...