Michael J.

same issue. I am using a cluster with client servers that each have 48 cores with hyperthreading up to 192 and want to trim PE fastq files that have ~...

Update! I converted the phyloseq to a taxmap object, then plotted each tax rank in order to get the slope of a line, for which I used as a heat...

Just a heads up, the warning message doesn't give any solution for the deprecation. `Warning message: 'write_phyloseq' is deprecated. Use '' instead. See help("Deprecated") and help("The microbiome::write_phyloseq will be deprecated...

I am also looking for an rsync like behavior. I am having to clone the entire project everytime I want to update the project files on a local server, rather...

Is there a reason why `--preload` isnt available as an option for kraken2?