Ashkan

Hi guys, Just following up on this thread, I was wondering how I can get structural connectome based on mean FA? In mrtrix3 documentation it is suggested to use the...

Thank you very much for your quick reply. It certainly does preprocessing steps but doesn't give me any confirmation for finishing the process. Here is the message I got in...

Thanks for the quick reply. I actually added the --stop-on-first-crash and also --verbose but still, no log file is generated in the /log directory. Here is the message again: [Node]...

The dataset is BIDS valid as below: 2363 Files, Resting-state 64 - Subjects T1w 1 - Session magnitude1 magnitude2 phase2 bold dwi sbref fieldmap I added two --verbose but still...

Here is the log generated in the terminal: [log.txt](https://github.com/PennLINC/qsiprep/files/6745251/log.txt)

Absolutely. here is the link to one of the data: https://drive.google.com/drive/folders/1h_CD_wAoMuwtgNkjjI5AhH0MZIPyDaDj?usp=sharing

Thanks, Matt for following this up. It's now all good. The final report includes all those visual reports. -w was the solution.