M0hammadL

Hi @simozhou, we have a model for that called scpoli which supports annotations of ATAC seq data too! @cdedonno

@Koncopd any update here?

Hi thanks for you trying it, which step is specifically slower?

It could be since they are basically two different implementations. Are trying on cpu or gpu?

Have you check if the model is using gpu? @alextopalova could you plz check this out? And open a Issue for this code to add scgen in theislab repo (theislab/scgen)...

It should be data training then which seems to be not supper efficient, we will work on it but that will take some time. Happy to merge if you have...

@alitinet @Koncopd

@Koncopd

Hey, no we don't provide that now, it would be awesome if you could help us here

@Koncopd