LucaTucciarone

Error in if (sum(P1) == 0) {: missing value where TRUE/FALSE needed

4

Hello! I can run cell-chat without any issue from a scRNAseq Seurat object but I'm finding problems with a ScanPy multiomics (rna+atacseq) object: This is how I load the dataset:...

output ALL LR interactions

3

Hey guys, Wanted to understand if it is possible to output ALL the interactions using the "computeCommunProb", also the not significative (as it seems that the threshold is automatically set...

Cannot find obvious signalling

2

Dear CellChat developors, I am Luca and I work in the Diabetes field. I have a big dataset with more than 30 samples from pancreatic islets (which are mainly based...

Hello! Thanks for the amazing tool you created. I'm suggesting an improvement for your tool, which I'd actually need. I've several ChIP-seq bed I want to visualise with your tool...

Does it really run in parallel?

1

Thank you so much for developing this great tool. I have scRNAseq data from 30 plus samples, around 200k cells and I tried to run magic using this code: `rna.counts_MAGIC

BPcells doesn't work with chromatin Assay

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### BPCells doesn't wok with chromatin assay I am working with a big multiomics object. I updated Seurat to Version 5, because I need the support of BPcells to avoid...

Reference mapping

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I have 10x multimome and 10xsciATACseq. I would like to reference map using Seurat V5, is there a vignette to use bpcells instead of Signac to do so?

Can we get a theme for daggerheart?