LovellHAGSC

Keeping indels, projecting reference coordinates?

1

Hi there, Is there any planned (or implemented) was to analyze indels via `snp-sites`? Basically, I want to annotate all variants (not just snps) in my multiple-sequence alignment and project...

User-defined blast directory?

2

Dear Dr. Derelle, Thank you for your work with Broccoli. Quick question, is there support for a user-supplied blast directory, like `orthofinder -b`? I'd like to port my orthology pipelines...