Louise Deconinck

Deal with .obsm and .varm when converting to SingleCellExperiment object

1

At least have a way to store the basic dimensionality reductions in reducedDims. Would be best to have the configuration of what to store where somewhat similar to the Seurat...

According to the vignette, this is the way to create a knockdown simulation: 0 ```r b3_genes % filter(module_id == "B3") %>% pull(feature_id) model_ko

Generate Python based anndata testfiles

3

Instead of relying on round-trip tests, we also want to be able to read in all possible Python arrays, matrices and dataframes.