readfish
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LooseLab
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Hi, We are interested in using the barcode balancing feature in amplicon ONT workflows. It is not clear to me in the documentation whether or not the barcode balancing with...
Hi @Adoni5, I am facing the above mentioned error while running readfish in MacOS with apple silicon. Also I am connecting via wifi using my mobile hotspot. I have verified...
I wanted to perform a run with only enrichment, so I had one region specified in TOML like the following. But I did not see any unblock actions from the...
All steps on the CI are getting warnings, see https://github.com/LooseLab/readfish/actions/runs/9000710511 for example. Lots of version numbers to bump
- crude, signal-space, live poly-a length estimation - skip basecall when chunks is poly-a sequence
As of MinKNOW 5.9 there is a change in how unblocks will be handled. To address this we should implement: ```[tasklist] ### Tasks - [x] Detect MinKNOW version on launch...
If a badly formatted bed file is supplied as part of a toml_live update the update fails and the original bed file is used. However, the user is not nitified...
As raised in #336 we do not capture every possible use case for readfish in our example tomls - we could provide some further exposition on this subject.
Ultra long reads segfault stats when using the `mappy-rs` plugin to align. The problem seems to be passing the memory around after it has been sent into the rust scope....
## Issue Currently decisions do not undergo any validation in TOMLs. `Actions` must be one of `stop_receiving`, `unblock` or `proceed`, but Decisions can be anything. For example the following Region...