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                                            LiyanJi

Problem when running BisulfiteGenotyper

It turns out the problems with the header of input bams. The header of bams were modified with GATK AddOrReplaceReadGroups with the default parameters together with VALIDATION_STRINGENCY=LENIENT. The above problems...

Error in (amed + 1):(bmed - 1) : result would be too long a vector

@chrisamiller Sorry, I made a mistook in param file. The problem has been solved now. But I still want to share my parameters and commands when I run ReadDepth using...