Renato Lima

Enhance fixSpecies() for names with authors

1

Add workaround in fixSpecies() in the flagging of "infra_specific" taxa for those with authorship from "van der Werff" and similar. Example: ``` > plantR::fixSpecies(data.frame(sp = "Sextonia pubescens van der Werff"),...

Trace back in which function the problem below occurrs: ``` plantR::prepName("AFA Lira") "Lira, A.F.A." # ok plantR::prepName("AF Araujo Lira") "Lira, A.A." # not ok plantR::prepName("Ferreira dos Santos, André") "Ferreira Dos,...

Updating the package citation after issue publication

The plantR function fixSpecies() gets too slow because flora::remove.authors uses a lapply internally. Try do a vectorized proxy of it within the internal accesory_tax functions of plantR

Check which function needs fixing to solve the issue below: ``` plantR::prepName("Alvares, Roberto") [1] "Alvares, R." # ok plantR::prepName("Alvares , Roberto") [1] "Roberto, A." # inverted ```

Problem while handling first family name with preposition

1

Check function code related to the problem below: ``` plantR::prepTDWG("Maria Souza da Silva", get.initials = FALSE, get.prep = TRUE) [1] "Silva, Maria Souza da" # ok plantR::prepTDWG("Maria Souza da Silva",...

Make fixSpecies() handle typical NCBI organism names

1

Names in NCBI/GenBank commonly have a particularly notation that fixSpecies() currently does not handle well. Improvements are needed. Examples are: - "Syzygium sp. DIR045" - "Malaxis sp. TBG132709" - "Senecio...

Adaptar a função para evitar as anomalias abaixo. ``` spp